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In one of the bonus modes from Danganronpa V3: Killing Harmony - Ultimate Talent Development Plan, the two are shown to have similar interactions to those from their Free Time Events. the World Destroyer, in Nagito's illusionary world, Mukuro is shown hiding behind a tree, jealous of Makoto and Sayaka Maizono walking together. In Super Danganronpa 2.5: Nagito Komaeda vs.
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After Junko explains why Makoto's luck is a threat to her plans, Mukuro asks whether she's going to kill him, with a noticeable hint of fear in her voice. In eleventh episode of Despair Arc, when Junko Enoshima suggests that there might be more to Makoto, Mukuro tries to convince her that he's just a loser. In turn, Makoto offers to help her find a new dream to chase after they escape, and he promises not to abandon her, even if she seems different from before. At the end of School Mode, Mukuro resolves to reveal her true identity to Makoto, despite pretending to be her sister for as long as they've known each other.
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Depending on the Events and dialogue options chosen by the player, Mukuro will even openly flirt with him in some scenarios. Mukuro subtly slips out hints of her identity several times throughout their interactions, and her attraction toward Makoto becomes increasingly apparent. She promises to get him acquainted with somebody like that once they escape the academy (likely referring to herself). In their first event, Mukuro describes Makoto as a passive boy and says that he needs an aggressive girl. Their relationship can be explored through optional Free Time and School Mode events, where Mukuro shows a clear attraction to Makoto. Neither character had many interactions in the main story, but School Mode, Danganronpa IF, and various spinoff materials reveal that Mukuro had a crush on Makoto before the events of Monokuma's Killing Game.